NANOPHOTONICS AND

BIODETECTION SYSTEMS LABORATORY

JOURNAL PUBLICATIONS

 

2023

[63] Arif E. Cetin*, “A Novel Triazolopyrimidinone Derivative: A Portable Electrochemical Approach to Investigate DNA Interactions”, Cumhuriyet Science Journal, Vol. 44, No: 4, pp. 617-624 (2023) *Corresponding Author

[62]  Arif E. Cetin*, “A portable and low-cost incubator system enabling real-time cell imaging based on a smart phone”, Turkish Journal of Physics, Vol. 47, No: 5, pp. 279 – 296 (2023) *Corresponding Author

[61] Sena Yaman, Meryem Beyza Avci, Fatma Kurul, Seda Nur Topkaya and Arif E. Cetin*, “Handheld Optofluidic Platform towards Binding Dynamics Applications in Field-Settings”, Sensors and Actuators A: Physical, Vol. 363,  pp. 114685 (2023) ‡Corresponding Author

[*Corresponding Author]

[60] Arif E. Cetin*, “A Portable Plasmonic Biosensor Kit for Diagnostics of Sexually Transmitted Infection”, Plasmonics, doi: 10.1007/s11468-023-02035-0 (2023) [*Corresponding Author]

[59] Vagif Nevruzoglu, Murat Tomakin, Melih Manir, Selcuk Demir, Fatih Saban Beris, Arif E. Cetin*, “Enhancing Label‑Free Biosensing With Cryogenic Temperature‑Induced Plasmonic Structures”, Plasmonics, Vol. 18, pp. 2437–2445 (2023). ‡Corresponding Author

[58] Arif E. Cetin*, Seda Nur Topkaya, Ziya Ata Yazici, Ozden Yalcin-Ozuysal, “Plasmonic Functional Assay Platform Determines the Therapeutic Profile of Cancer Cells”, ACS Sensors, Vol. 8, No: 7, pp. 2543-2555 (2023). [*Corresponding Author]

[57] Fatma Kurul, Huseyin Istanbullu, Huseyin Oguzhan Kaya, Arif E. Cetin, Seda Nur Topkaya, “Electrochemical Properties of Fused Pyrimidine-Triazole Heterocyclic Molecules as Novel Drug Candidates”, Turkish Journal of Pharmaceutical Sciences, doi: 10.4274/tjps.galenos.2023.46095 (2023).

[56] Meryem Beyza Avci, S. Deniz Yasar, Arif E. Cetin, “An Optofluidic Platform for Cell-Counting Applications”, Analytical Methods, Vol. 15, pp. 2244-2252 (2022).

[55] Gorkem Liman, Emre Ergene, Emrecan Yildiz, Kubra Ozkan Hukum, Pinar Yilgor Huri, Arif E. Cetin, Hakan Usta, Gokhan Demirel, “Dynamic Tuning of Plasmonic Hot-Spot Generation through Cilia-Inspired Magnetic Actuators”, Advanced Intelligent Systems, Vol. 5, No: 6, 2200420 (2023).

 

2022

[54] Meryem Beyza Avci, Rabia Hamurcu, Ozge Ada Bozbas, Ege Gurman, Arif E. Cetin, Ebru Sayilgan, “Design of Steady-State Visually-Evoked Potential Based Brain-Computer Interface System”, Journal of Intelligent Systems With Applications, Vol. 5, No: 2, pp. 86-89 (2022).

[53] Zhiliang Zhang, Feng Zhao1, Renxian Gao, Chih-Yu Jao, Churong Ma, Jie Li, Xiangping Li, Bai-Ou Guan, Arif E. Cetin, Kai Chen, “Rayleigh Anomaly-Enabled Mode Hybridization in Gold Nanohole Arrays by Scalable Colloidal Lithography for Highly-sensitive Biosensing”, Nanophotonics, Vol. 11, No 3, pp. 507-517 (2021)

 

2021

[52] Seda Nur Topkaya, Idil Karaca Acari, Huseyin Oguzhan Kaya, Imren Ozcan, Suleyman Koytepe, and Arif E. Cetin, “Interaction of Nickel Ferrite Nanoparticles with Nucleic Acids”, Colloids and Surfaces B: Biointerfaces, Vol. 211, pp. 112282 (2021).

[51] Seda Nur Topkaya, Ezgi Turunc, Arif E. Cetin, and, “Multi-Walled Carbon Nanotubes and Gold Nanorod Decorated Biosensor for Detection of microRNA-126”, Electroanalysis, Vol. 33, No 9, pp. 2078-2086 (2021).

[50] Arif E. Cetin*, Zeynep A. Kocer, Seda Nur Topkaya, Ziya Ata Yazici, “Handheld Plasmonic Biosensor for Virus Detection in Field-Settings”, Sensors and Actuators B: Chemical, Vol. 344, pp. 130301 (2021). [*Corresponding Author]

[49] Maryam Daneshpour, Zhina Mazhari, Melika Haji Mohammadi, Arif E. Cetin, Maedeh Khodamoradi, Amir Reza Aref, Mostafa Azimzadeh, and Seda Nur Topkaya, “Review of Current Diagnostics Developed for COVID-19”, Analytical and Bioanalytical Chemistry Research, Vol. 8, No 4, pp. 417–444 (2021).

[48] Ayca Karasakal, Sulinay Parlar, Vildan Alptuzun, Arif E. Cetin, and Seda Nur Topkaya, “A Novel Molecule: 1-(2,6 dichlorobenzyl)-4-(2-(2-4-hydroxybenzylidene)hydrazinyl)pyridinium chloride and its Interaction with DNA”, Electroanalysis, Vol. 33, No 7, pp. 1819-1825 (2021).

[47] Arif E. Cetin*, Seda Nur Topkaya, Ozden Yalcin-Ozuysal, Ali Khademhosseini, “Refractive Index Sensing For Measuring Single Cell Growth”, ACS Nano, Vol. 15, No 6, pp. 10710–10721 (2021). [*Corresponding Author]

[46] Yeni Wahyuni Hartati, Seda Nur Topkaya, Shabarni Gaffar, Husein Hernandi Bahti, Arif E. Cetin, “Synthesis and Characterization of Nanoceria for Electrochemical Sensing Applications” RSC Advances, Vol. 11, No 27, pp. 16216–16235 (2021).

[45] Gorkem Liman, Emrecan Yildiz, Hasan Ilhan, Arif E. Cetin, Gokhan Demirel, “Hot-Spot Engineering Through Soft Actuators for Surface-Enhanced Raman Spectroscopy (SERS) Applications”, Advanced Optical Materials, Vol. 9, No 16, pp. 2100009 (2020).

[44] Huseyin Oguzhan Kaya, Arif E. Cetin, and Seda Nur Topkaya, “Electrochemical Detection of Linagliptin and Its Interaction with DNA”, Turkish Journal of Pharmaceutical Sciences, Vol. 18, No 5, pp. 645-651 (2021).

[43] Huseyin Oguzhan Kaya, Arif E. Cetin*, Mostafa Azimzadeh, and Seda Nur Topkaya, “Pathogen Detection with Electrochemical Biosensors: Advantages, Challenges and Future Perspectives”, Journal of Electroanalytical Chemistry, Vol. 882, No 1, pp. 114989 (2021). [*Co-Corresponding Author]

[42] Seda Nur Topkaya, and Arif E. Cetin, “Electrochemical Aptasensors for Biological and Chemical Analyte Detection”, Electroanalysis, Vol. 33, No 2, pp. 277–291 (2021).

 

2020

[41] Rustamzhon Melikov, Shashi Bhushan Srivastava, Onuralp Karatum, Itir Bakis Dogru-Yuksel, Houman Bahmani Jalali, Sadra Sadeghi, Ugur Meric Dikbas, Burak Ulgut, Ibrahim Halil Kavakli, Arif E. Cetin, and Sedat Nizamoglu, “Plasmon-Coupled Photocapacitor Neuromodulators”, ACS Applied Materials & Interfaces, Vol. 12, No 32, pp. 35940–35949 (2020).

[40] Seda Nur Topkaya, Ayca Karasakal, Arif E. Cetin, Sulunay Parlar, and Vildan Alptuzun, “Electrochemical Characteristics of a Novel Pyridinium Salt as a Candidate Drug Molecule and Its Interaction with DNA”, Electroanalysis, Vol. 32, pp. 1-9, (2020).

[39] Arif E. Cetin*, Cihan Yilmaz, Betty C. Galarreta, Gizem Yilmaz, Hatice Altug and Ahmed Busnaina, “Fabrication of Sub-10 nm Plasmonic Gaps for Ultra-Sensitive Raman Spectroscopy”, Plasmonics, (2020). [*Corresponding Author]

 

2019

[38] Seda Nur Topkaya and Arif E. Cetin, “Investigation of Metal Ion Effect on Specific DNA Sequences and DNA Hybridization”, Electroanalysis, Vol. 32, No 1, pp. 112-118 (2019).

[37] Arif E. Cetin*, and Seda Nur Topkaya “Plasmonic Diffraction Field Pattern Imaging Could Resolve Ultra-Sensitive Bio-Information”, ACS Photonics, Vol. 6, 11, pp. 2626−2635 (2019). [*Corresponding Author]

[36] Habibe Durmaz, Arif E Cetin*, Yuyu Li, and Roberto Paiella, “A Polarization Insensitive Wide-Band Perfect Absorber”, Advanced Engineering Materials, Vol. 1900188, pp. 1-6 (2019). [*Co-Corresponding Author]

[35] Seda Nur Topkaya, and Arif E. Cetin, “Determination of Electrochemical Interaction Between 2‐(1H‐benzimidazol‐2‐yl) Phenol and DNA Sequences”, Electroanalysis, Vol. 31, pp. 1571-1578 (2019).

[34] Arif E. Cetin*, and Seda Nur Topkaya, “Photonic Crystal and Plasmonic Nanohole Based Label-Free Biodetection”, Biosensors and Bioelectronics, Vol. 132, pp. 196-202 (2019). [*Corresponding Author]

[33] Arif E. Cetin*, “Effect of left handed materials in surface plasmon excitation and propagation length”, Turkish Journal of Physics, Vol. 43, pp. 26-36 (2019). [*Corresponding Author]

[32] Ahmet F. Coskun, Seda Nur Topkaya, Ali K. Yetisen, and Arif E. Cetin*, “Portable Multiplex Optical Assays”, Advanced Optical Materials, Vol. 7, No 4, 1801109 (2019). [*Co-Corresponding Author and Equally contributed]

 

2018

[31] Habibe Durmaz, Yuyu Li, and Arif E. Cetin*, “A Multiple-Band Perfect Absorber for SEIRA Applications”, Sensors and Actuators B: Chemical, Vol. 275, pp. 174-179 (2018). [*Co-Corresponding Author]

[30] Arif E. Cetin*, Pinar Iyidogan, Yuki Hayashi, Mark Wallen, Kandaswamy Vijayan, Eugene Tu, Mike Nguyen, and Arnold Oliphant, “Plasmonic Sensor Could Enable Label-Free DNA Sequencing”, ACS Sensors, Vol. 3, No 3, pp. 561-568 (2018). [*Corresponding Author]

[29] Seda Nur Topkaya, Vasfiye Hazal Ozyurt, Arif E. Cetin, and Semih Otles, “Nitration of Tyrosine and Its Effect on DNA Hybridization”, Biosensors and Bioelectronics, Vol. 102, pp. 464-469 (2018).

[28] Yasa Eksioglu, Arif E. Cetin, and Habibe Durmaz, “Multi-Band Plasmonic Platform Utilizing UT-Shaped Graphene Antenna Arrays”, Plasmonics, Vol. 13, Issue 3, pp. 1081-1088 (2018).

 

2017

[27] Arif E. Cetin, Mark Stevens, Nicholas Calistri, Mariateresa Fulciniti, Selim Olcum, Robert Kimmerling, Nikhil Munshi, and Scott Manalis, “Determining Therapeutic Susceptibility in Multiple Myeloma by Single-Cell Mass Accumulation”, Nature Communications, Vol. 8, No 1613, pp. 1-12 (2017).

[26] Arif E. Cetin, Martin Drsata, Yasa Eksioglu, and Jiri Petracek, “Extraordinary Transmission Characteristics of Subwavelength Nanoholes with Rectangular Lattice”, Plasmonics, Vol. 12, No 3, pp. 655-661 (2017).

 

2016

[25] Arif E. Cetin, Semih Korkmaz, Habibe Durmaz, Ekin Aslan, Sabri Kaya, Roberto Paiella, and Mustafa Turkmen, “Quantification of Multiple Molecular Finger-Prints by Dual-Resonant Perfect Absorber”, Advanced Optical Materials, Vol. 4, No 8, pp. 1274-1280 (2016).

[24] Miquel Rudé, Vahagn Mkhitaryan, Arif E. Cetin, Timothy A. Miller, Albert Carrilero, Simon Wall, F. Javier García de Abajo, Hatice Altug, and Valerio Pruneri, “Ultrafast and broadband tuning of resonant optical nanostructures using phase-change materials”, Advanced Optical Materials, Vol. 4, No 7, pp. 1060-1066 (2016).

[23] Yasa Eksioglu, Arif E. Cetin, and Jiri Petracek, “Optical Response of Plasmonic Nanohole Arrays: Comparison of Square and Hexagonal Lattices”, Plasmonics, Vol. 11, No 3, pp. 851-856 (2016).

 

2015

[22] Arif E. Cetin, Dordaneh Etezadi, Betty Galarreta, Mickael P. Busson, Yasa Eksioglu, and Hatice Altug, “Plasmonic Nanohole Arrays on a Robust Hybrid Substrate for Highly Sensitive Label-Free Biosensing”, ACS Photonics, Vol. 2, No 8, pp. 1167-1174 (2015).

[21] Arif E. Cetin, Serap Aksu, Mustafa Turkmen, Dordaneh Etezadi, and Hatice Altug, “Theoretical and Experimental Analysis of Subwavelength Bowtie-Shaped Antennas”, Journal of Electromagnetic Waves and Applications, Vol. 29, No 13, pp. 1686-1698 (2015).

[20] Arif E. Cetin, Sabri Kaya, Alket Mertiri, Ekin Aslan, Shyamsunder Erramilli, Hatice Altug, and Mustafa Turkmen, “Dual-Band Plasmonic Resonator based on Jerusalem Cross-Shaped Nanoapertures”, Photonics and Nanostructures: Fundamentals and Applications, Vol. 15, pp. 73-80 (2015).

[19] Arif E. Cetin*, “FDTD Analysis of Optical Forces on Bowtie Antennas for High-Precision Trapping of Nanostructures”, International Nano Letters, Vol. 5, No 1, pp. 21-27 (2015). [*Corresponding Author]

[18] Arif E. Cetin*, Mustafa Turkmen, Serap Aksu, Dordaneh Etezadi, and Hatice Altug, “Multi-Resonant Compact Nanoaperture with Accessible Large Nearfields”, Applied Physics B, Vol. 118, No 1, pp. 29-38 (2015). [*Co-Corresponding Author]

 

2014

[17] Ahmet F. Coskun, Arif E. Cetin*, Betty C. Galarreta, Daniel Adrianzen Alvarez, Hatice Altug, and Aydogan Ozcan, “Lensfree Optofluidic Plasmonic Sensor for Real-Time and Label-Free Monitoring of Molecular Binding Events over a Wide Field-of-Wiew”, Scientific Reports (Nature Publishing Group), Vol. 4, No 6789, pp. 1-7 (2014). [*Equally contributed]

[16] Arif E. Cetin, Dordaneh Etezadi, and Hatice Altug, “Accessible Nearfields by Nanoantennas on Nanopedestals for Ultrasensitive Vibrational Spectroscopy”, Advanced Optical Materials, Vol. 2, No 9, pp. 866-872 (2014).

[15] Cihan Yilmaz, Arif E. Cetin, Georgia Goutzamanidis, Jun Huang, Sivasubramanian Somu, Hatice Altug, Dongguang Wei, and Ahmed Busnaina, “Three-dimensional Crystalline and Homogeneous Metallic Nanostructures Using Directed-Assembly of Nanoparticles”, ACS Nano, Vol. 8, No 5, pp. 4547-4558 (2014).

[14] Arif E. Cetin, Ahmet F. Coskun, Betty C. Galarreta, Min Huang, David Herman, Aydogan Ozcan, and Hatice Altug, “Handheld High-Throughput Plasmonic Biosensor using Computational On-Chip Imaging”, Light: Science & Applications (Nature Publishing Group), Vol. 3, No e122, pp. 1-10 (2014).

 

2013

[13] Arif E. Cetin, Alket Mertiri, Shyamsunder Erramilli, and Hatice Altug, “Thermal Tuning of Surface Plasmon Polaritons Using Liquid Crystal”, Advanced Optical Materials, Vol. 1, No 12, pp. 915-920 (2013).

[12] Min Huang, Betty C. Galarreta, Arif E. Cetin, and Hatice Altug, “Actively Transporting Virus Like Analytes with Optofluidics for Rapid and Ultrasensitive Biodetection”, Lab on a Chip, Vol. 13, No 24, pp. 4842-4847 (2013).

[11] Serap Aksu, Arif E. Cetin, Ronen Adato, and Hatice Altug, “Plasmonically Enhanced Vibrational Biospectroscopy Using Low-Cost Infrared Antenna Arrays by Nanostencil Lithography”, Advanced Optical Materials, Vol. 1, No 11, pp. 798-803 (2013).

 

2012

[10] Arif E. Cetin, and Hatice Altug, “Fano Resonant Ring/Disk Plasmonic Nanocavities on Conducting Substrates for Advanced Biosensing”, ACS Nano, Vol. 6, No 11, pp. 9989-9995 (2012).

[9] Arif E. Cetin, Ahmet Ali Yanik, Alket Mertiri, Shyamsunder Erramilli, Ozgur E. Mustecaplioglu, and Hatice Altug, “Field-Effect Active Plasmonics for Ultracompact Electro-Optic Switching”, Applied Physics Letters, Vol. 101, Iss. 12, pp. 121113 (2012).

 

2011

[8] Arif E. Cetin, Mustafa Turkmen, Serap Aksu, and Hatice Altug, “Nanoparticle-Based Metamaterials as Multiband Plasmonic Resonator Antennas”, IEEE Transactions on Nanotechnology, Vol. 11, No. 1, pp. 208-212 (2011).

[7] Arif E. Cetin, Alp Artar, Mustafa Turkmen, Ahmet Ali Yanik, and Hatice Altug, “Plasmon Induced Transparency in Cascaded π-Shaped Metamaterials”, Optics Express, Vol. 19, Iss. 23, pp. 22607-22618 (2011).

[6] Ahmet Ali Yanik, Arif E. Cetin, Min Huang, Alp Artar, S. Hossein Mousavi, Alexander Khanikaev, John H. Connor, Gennady Shvets, and Hatice Altug, “Seeing Protein Monolayers with Naked Eye Through Plasmonic Fano Resonances”, Proceedings of the National Academy of Sciences (PNAS), Vol. 108, Iss. 8, 11784-11789 (2011).

[5] Mustafa Turkmen, Serap Aksu, Arif E. Cetin, Ahmet Ali Yanik, and Hatice Altug, “Multi-Resonant Metamaterials Based on UT-Shaped Nano-Aperture Antenna”, Optics Express, Vol. 19, Iss. 8, pp. 7921-7928 (2011).

[4] Arif E. Cetin, Ahmet Ali Yanik, Cihan Yilmaz, Sivasubramanian Somu, Ahmed Busnaina, and Hatice Altug, “Monopole Antenna Arrays for Optical Trapping, Spectroscopy, and Sensing”, Applied Physics Letters, Vol. 98, Iss. 11, pp. 111110 (2011).

 

2010

[3] Arif E. Cetin, K. Guven, and O. E. Mustecaplioglu, “Active Control of Focal Length and Beam Deflection in a Metallic Nano-Rod Lens System with Multiple Sources”, Optics Letter, Vol. 35, No. 12, pp. 1980-1982 (2010).

[2] Arif E. Cetin*, and Ozgur E. Mustecaplioglu, “Electrically Tunable Dicke Effect in Double-Ring resonator”, Physical Review A, Vol. 81, No. 4, pp. 043812 (2010). [*Co-Corresponding Author]

[1] Arif E. Cetin, Alphan Sennaroglu, and Ozgur E. Mustecaplioglu, “Nanoscale Plasmonic Devices for Dynamically Controllable Beam Focusing and Scanning”, Photonics and Nanostructures: Fundamentals and Applications, Vol. 8, Issue 1, pp. 7-13 (2010).